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PROTEOMICS

Proteomics approaches are essential to study diseases at a protein level in both clinical
and basic research. They help in understanding underlying disease mechanisms
and identifying specific molecular signatures.

Founded in 2006, PPN is part of SFR Necker and the network of proteomic platforms of University of Paris.
The PPN is labeled IBiSA, a consortium composed of the CEA, CNRS, CPU, INCa, INRAE, Inria, Inserm and the MESR, whose objective is to promote the implementation of new technologies by supporting selected platforms.

PPN’s mission is to enable academic teams to succeed in their proteomics projects.
The platform is open to research institutes, clinical departments and the private sector –
in France and abroad.

 

In 2026, the PPN fully renewed its instrumentation portfolio, which now features two cutting-edge mass spectrometers, the timsTOF HT and timsULTRA AIP, delivering exceptional resolution, sensitivity, and analytical performance. Coupled with Evosep One and nanoElute 2 chromatography systems, these instruments enable high-throughput protein identification and quantification. The platform is also equipped with an Octet biolayer interferometry system for biomolecular interaction analysis.

 

In 2025, The platform has recently acquired the cellenONE X1 NEO, a state-of-the-art system dedicated to single-cell isolation and automated handling of ultra-low volumes. Combining image-based cell selection with high-precision dispensing (from pico- to nanoliter volumes), this instrument enables the development of robust and reproducible workflows
for single-cell applications and studies involving limited amounts of biological material.

 

In 2023, Necker Proteomics has introduced a new technology dedicated to plasma biomarker research: Proteograph from Seer. The Proteograph Assay is based on the formation of a protein corona on functionalized nanoparticles, which dramatically increases the number
of plasma proteins quantified by mass spectrometry (from 800 to over 4000) (Learn more at 
https://seer.bio/products/proteograph-product-suite/).

 

PPN is the only laboratory in France offering this new technology, and has attained the label
of a "reference laboratory" for Seer in Europe.

The dynamic interaction between the Translational Proteomics Lab and the Necker Proteomic Platform offers state of the art technology and expertise to help understanding disease (PTMs, differential and interaction proteomics) and to search for diagnostic/prognostic biomarkers in body fluids by MS (high-throughput LC-MSMS, EVs analysis).

 

The PPN platform has adopted a quality management approach in order to optimize
its organization, guarantee the traceability of all information concerning projects and provide
its collaborators with the most reliable results.

Since February 2023 PPN is certified according
to the requirements of the quality management standards ISO 9001:2016 and NF X50-900:2016. The certification covers all of PPN's areas of activity : « Services and research
& development activities in clinical and translational proteomics » (
ISO and NFX LRQA Certificates).

The certification was renewed in January 2026 and remains valid for the following three years.

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SERVICES

EXPERTISES AND SERVICES

  • Advice to researchers and design of strategy adapted to their project.

  • Identification of proteins for simple or complex samples.

  • Identification and quantification of proteins (Labelfree SILAC, ITRAQ).

  • Proteomic analysis of body fluids and extracellular vesicles (urine, BAL, sweat, plasma, amniotic fluid, CSF).

  • Statistical and bioinformatic analysis (logiciels DIA-NN, Spectronaut, Peaks, Maxquant, Perseus, R).

  • Functional protein analysis and data visualization (Mass Dynamics, Ingenuity Pathway Analysis, and in-house R scripts) .

 

APPLICATIONS

 

  • Identification of new protein-protein, RNA-protein, DNA-protein interactions

  • Identification and quantification of PTMs (acetylation, glycosylation, phosphorylation)

  • Study of the differential proteome in the disease vs control

  • Multiple dosage of known proteins

  • Discovery and validation of biomarkers

  • Quality controls of recombinant proteins

FEES

Private
sector
Services
SFR
Necker
Other
acad.
Inserm

Enrichment of peptides and proteins
(EVs, PTM, Fractionation)

LC - MSMS Short (IP, bacteria, PLASMA, URINE, BAL, CSF)(Evosep)

LC - MSMS Long (Cell/tissue lysate, deep Biofluids, PTMs)

Bioinformatic analysis (IR, Python)

150

400

750

250

2000

100

400

450

100

150

300

250

350

3500

350

500

2000

650

2500

550

Proteograph sample preparation
(kit) (LC-MSMS cost to add)

*For the CNRS and UPC teams, unmixed with Inserm, a management fee of 15% will be applied (charged by Inserm)

EQUIPMENT

TEST_timsTOF_Pro_nanoELUTE_3D.jpg

TimsTOF HT MS (Bruker)​ 

couplé à une chaine

de nanochromatographie

EVOSEPOne

TEST_TQSXEVO.jpg

UPLC couplé à un TQS Xevo (Waters)​ 

(partagé avec MS APHP Necker Platform)

TEST_OCTET_RED96.jpg

Octet Red96 
BioLayer Interferometry
(BLI) analyser

BLUEcellenone.jpg

CellenONE X1 NEO

NEW ! 2025

TEST_SP100.jpg

Station de travail SP100 (Seer)

Proteograph

BLUEtismaip.jpg

TimsUltra AIP

 

NEW ! 2026

STAFF

Chiara GUERRERA, PhD

Head

Vincent GOFFIN

Scientific Referent

Cerina CHHUON

Operational Manager

Joanna LIPECKA
Ines METATLA
Vincent JUNG
Sara CECCACCI
Kevin ROGER

PUBLICATIONS

More than 100 publications, of which 61 in the last 5 years. 

For the full list of publications click here

*** publication en 1er ou dernier auteur par les ingénieurs de la plateforme

2026

 

 Biallelic variants in CHCHD4 are associated with combined OXPHOS defect leading
to mitochondrial disease.

Mantecon M, Chhuon C, Roger K, Guerrera IC, Bole C, Nitschke P, Dufeu-Bérat CM,
Ashcroft M, Taylor RW, Boddaert N, Rötig A.

 

HGG Adv. 2026 Apr 14;7(3):100615. doi: 10.1016/j.xhgg.2026.100615.
Online ahead of print.PMID: 41981912 

 

An unusual case of RIPK1-related immunodeficiency: The importance of a timely diagnosis for a novel clinical and therapeutic pattern.

Parentelli AS, Lopes AA, Bastard P, Bizien L, Bondet V, Duffy D, Fernandes A, Fabrega S, Dussiot M, Levy Y, Smahi A, Jung V, Guerrera C, Sorin B, Stolzenberg MC, Rieux-Laucat F, Bruneau J, Picard C, Casanova JL, Georgin-Lavialle S, Hermine O.

 

Pediatr Allergy Immunol. 2026 Mar;37(3):e70302. doi: 10.1111/pai.70302.PMID: 41760196

 

VAMP7-dependent late endosomal secretion of ER and mitochondrial proteins impacts the tumor microenvironment and macrophage engagement.

Vats S, Dionisio P, Lemercier Q, Pineau R, Therreau L, Lipecka J, Cholley B, Moog JB, Wojnacki J, Keime C, Zala D, Bun P, Freire S, Domingues N, Danglot L, Guerrera IC,
Delevoye C, Chevet E, Raimundo N, Galli T.

 

Nat Commun. 2026 Feb 21;17(1):3012. doi: 10.1038/s41467-026-69900-4.PMID: 41723185 

 

Biallelic germline variants in the hematologic malignancy predisposition gene DDX41 cause retinal dystrophy through dysregulation of retinal homeostasis.

Mars Z, Zanetti A, Kaminska K, Miyagawa T, Liu D, Antonio A, Arno G, Audo I, Ayuso C, Muhammad Jafar Hussain H, Bao X, Barberán-Martínez P, Bocquet B,
Boguszewska-Chachulska A, Condroyer C, David P, Dollfus H, Fares-Taie L,
Fernández-Caballero L, García-García G, Michel V, Guerrera CI, Jung V, Kessel L, Gioja L,
Lin S, Matczynska E, Millán JM, Moye AR, Martín-Gutiérrez MP, Quinodoz M, Robert MP, Roger JE, Sousa-Luis R, Swafiri ST, Teper S, Meunier I, Patat O, Pennesi ME, Wadt KAW, Wang M, Webster AR, Yang P, Yumei L, Zeitz C, Rieux-Laucat F, Giraudier S, Chen R, Fica SM, Rivolta C, Sebert M, Rozet JM, Perrault I.

 

medRxiv [Preprint]. 2026 Jan 30:2026.01.28.26344834. doi: 10.64898/2026.01.28.26344834.PMID: 41646732  Preprint.

 

Proteomic Analysis of Regulated Dendritic Cell Endosomes Reveals Dynamic Adaptation to Antigen Uptake and Cross-Presentation.

Senni A, Grumbach L, Ceccacci S, Frechin M, Goudin N, Guerrera IC, Bertocci B,
van Endert P.

 

Eur J Immunol. 2026 Feb;56(2):e70133. doi: 10.1002/eji.70133.PMID: 41630179 

 

***Proteomics reveals altered lipid biosynthesis and keratin hyperphosphorylation
in pachyonychia congenita.

Ceccacci S, Roger K, Marchal L, Ragot H, Schwartz J, Coulombe PA, Guerrera IC,
Hovnanian A.

 

J Invest Dermatol. 2026 Jan 23:S0022-202X(26)00032-1. doi: 10.1016/j.jid.2026.01.011. Online ahead of print.PMID: 41581590

2025

 

RIPK1 inhibition reduces biliary injury and fibrosis in primary sclerosing cholangitis.

Soret PA, Steunou V, Hedou J, Tokgozoglu J, Pistorio V, Majdi A, Darwane N, Delaunay JL, Benyahia S, Dinard L, Ledent T, Metatla I, Guerrera C, Lhomme M, Ponnaiah M, Galon J, Soussan P, Serfaty L, Corpechot C, Housset C, Aït-Slimane T, Verdonk F, Chazouillères O, Wendum D, Ratziu V, Lemoinne S, Cadoret A, Chignard N, Gautheron J.

 

Sci Adv. 2025 Dec 19;11(51):eadz7907. doi: 10.1126/sciadv.adz7907.
Epub 2025 Dec 17.PMID: 41406236 

 

Characterization of the Regulatory AAA-ATPase Subunit Rpt3 in Plasmodium berghei as an Activator of Protein Phosphatase 1.

Lainé C, De Witte C, Martoriati A, Farce A, Metatla I, Guerrera IC, Cailliau K, Khalife J,
Pierrot C.

 

Int J Mol Sci. 2025 Dec 3;26(23):11720. doi: 10.3390/ijms262311720.PMID: 41373862 

 

Mono-allelic pathogenic variants in JAG1 cause autosomal dominant tubulo-interstitial kidney disease (ADTKD-JAG1).

Menguy L, Hudier L, Zaidan M, Knebelmann B, Sayer JA, Arcila-Galvis J, Arondel C,
Hummel A, Dorval G, Morinière V, Fula-Pitu L, Guerrera C, Buob D, Rabeyrin M, Marijon P, Jean-Marcais N, Fournier C, Duong Van Huyen JP, Antignac C, Saunier S, Heidet L.

 

Kidney Int. 2026 Feb;109(2):354-364. doi: 10.1016/j.kint.2025.08.033.
Epub 2025 Oct 6.PMID: 41061854

 

Laser-activated nanoparticles rewire tumor microenvironment enhancing PD-1 blockade and T cell response in cholangiocarcinoma.

Minini M, Avveduto G, Becharef S, Meunier-Thaens M, Lekbaby B, Perez-Lazon M,
Machado A, Guilbert T, Lesieur J, Renault G, Ceccacci S, Guerrera IC, Klein C, Augustin J, Bazzi R, Roux S, Pol J, Donnadieu E, Gazeau F, Fouassier L.

 

Hepatology. 2025 Oct 2. doi: 10.1097/HEP.0000000000001545. Online ahead of print.PMID: 41037683

 

Immune response and clinical severity are shaped by skin-adapted Staphylococcus aureus in chronically infected patients.

Jamet A, Fu X, Dietrich C, Bellon N, Attailia M, Uyar E, Montabord M, Dubail I, Kunene K, Ferroni A, Polivka L, Dupuis M, Euphrasie D, Leclerc-Mercier S, Four N, Metatla I, Roger K, Lipecka J, Guerrera IC, Mirouze N, Charbit A, Coureuil M, Charbit-Henrion F, Hadj-Rabia S, Steffann J, Lezmi G, Bodemer C, Leite-de-Moraes M.

 

Sci Transl Med. 2025 Aug 27;17(813):eadq7985. doi: 10.1126/scitranslmed.adq7985. Epub 2025 Aug 27.PMID: 40864680 

 

***Mining the plasma proteome: Evaluation of enrichment methods for depth
and reproducibility.

Roger K, Metatla I, Ceccacci S, Wahbi K, Motté L, Chhuon C, Guerrera IC.

 

J Proteomics. 2025 Oct 30;321:105519. doi: 10.1016/j.jprot.2025.105519.
Epub 2025 Aug 18.PMID: 40829696 

 

ER-endosome contacts generate a local environment promoting phagophore formation.

Da Graça J, Thiola C, Rouabah M, Guerrera IC, El Khallouki N, Romao M, Alemany C, Amiri D, Dubois S, Srimoorthy A, Giordano F, Raposo G, Morel E.

 

Cell Rep. 2025 Jul 22;44(7):115993. doi: 10.1016/j.celrep.2025.115993.
Epub 2025 Jul 10.PMID: 40644301 

 

Insulin-Degrading Enzyme Regulates mRNA Processing and May Interact
with the CCR4-NOT Complex.

Bertocci B, Yilmaz A, Waeckel-Énée E, Guerrera C, Roger K, Touré L, van Endert PM.

 

Cells. 2025 May 28;14(11):792. doi: 10.3390/cells14110792.PMID: 40497968 

 

TBK1 is involved in programmed cell death and ALS-related pathways
in novel zebrafish models.

Raas Q, Haouy G, de Calbiac H, Pasho E, Marian A, Guerrera IC, Rosello M, Oeckl P,
Del Bene F, Catanese A, Ciura S, Kabashi E.

 

Cell Death Discov. 2025 Mar 12;11(1):98. doi: 10.1038/s41420-025-02374-3.
PMID: 40075110 

 

A primary cilia-autophagy axis in hippocampal neurons is essential to maintain cognitive resilience.

Rivagorda M, Romeo-Guitart D, Blanchet V, Mailliet F, Boitez V, Barry N, Milunov D, Siopi E, Goudin N, Moriceau S, Guerrera C, Leibovici M, Saha S, Codogno P, Morselli E, Morel E, Armand AS, Oury F.

 

Nat Aging. 2025 Mar;5(3):450-467. doi: 10.1038/s43587-024-00791-0.
Epub 2025 Feb 21.PMID: 39984747 

 

***Molecular insights into myelomeningocele via proteomic analysis of amniotic fluid.

Guilbaud L, Roger K, Schmidt A, Chhuon C, Breimann S, Lipecka J, Dreux S, Müller SA,
Zérah M, Larghero J, Jouannic JM, Lichtenthaler SF, Guerrera IC.

 

J Proteomics. 2025 Mar 20;313:105372. doi: 10.1016/j.jprot.2024.105372.
Epub 2025 Jan 6.PMID: 39778765

 

2024

GPATCH11 variants cause mis-splicing and early-onset retinal dystrophy
with neurological impairment.

Zanetti A, Dujardin G, Fares-Taie L, Amiel J, Roger JE, Audo I, Robert MP, David P, Jung V, Goudin N, Guerrera IC, Moriceau S, Amana D, Assia Batzir N, Bachar-Zipori A,
Basel Salmon L, Boddaert N, Briault S, Bruel AL, Costet-Fighiera C, Coutinho Santos L, Gitiaux C, Kaminska K, Kuentz P, Orenstein N, Philip-Sarles N, Plutino M, Quinodoz M,
Santos C, Sigaudy S, Soeiro E Sá M, Sofrin E, Sousa AB, Sousa-Luis R, Thauvin-Robinet C,
van Dijk EL, Zaafrane-Khachnaoui K, Zur D, Kaplan J, Rivolta C, Rozet JM, Perrault I.

 

Nat Commun. 2024 Nov 21;15(1):10096. doi: 10.1038/s41467-024-54549-8.
PMID: 39572588 

 

Extracellular vesicles from microglial cells activated by abnormal heparan sulfate oligosaccharides from Sanfilippo patients impair neuronal dendritic arborization.

Dias C, Ballout N, Morla G, Alileche K, Santiago C, Guerrera IC, Chaubet A, Ausseil J,
Trudel S.

 

Mol Med. 2024 Nov 4;30(1):197. doi: 10.1186/s10020-024-00953-1.PMID: 39497064 

 

Poly-GP accumulation due to C9orf72 loss of function induces motor neuron apoptosis through autophagy and mitophagy defects.

de Calbiac H, Renault S, Haouy G, Jung V, Roger K, Zhou Q, Campanari ML, Chentout L,
Demy DL, Marian A, Goudin N, Edbauer D, Guerrera C, Ciura S, Kabashi E.

 

Autophagy. 2024 Oct;20(10):2164-2185. doi: 10.1080/15548627.2024.2358736.
Epub 2024 Sep 24.PMID: 39316747 

 

PP1 phosphatase controls both daughter cell formation and amylopectin levels
in Toxoplasma gondii.

Khelifa AS, Bhaskaran M, Boissavy T, Mouveaux T, Silva TA, Chhuon C, Attias M, Guerrera IC, De Souza W, Dauvillee D, Roger E, Gissot M.

 

PLoS Biol. 2024 Sep 10;22(9):e3002791. doi: 10.1371/journal.pbio.3002791.
eCollection 2024 Sep.PMID: 39255306 

 

Chloride deregulation and GABA depolarization in MTOR-related malformations
of cortical development.

Bakouh N, Castaño-Martín R, Metais A, Dan EL, Balducci E, Chhuon C, Lepicka J, Barcia G, Losito E, Lourdel S, Planelles G, Muresan RC, Moca VV, Kaminska A, Bourgeois M,
Chemaly N, Rguez Y, Auvin S, Huberfeld G, Varlet P, Asnafi V, Guerrera IC, Kabashi E, Nabbout R, Ciura S, Blauwblomme T.

 

Brain. 2025 Feb 3;148(2):549-563. doi: 10.1093/brain/awae262.PMID: 39106285 

 

Alternative TSS use is widespread in Cryptococcus fungi in response to environmental cues and regulated genome-wide by the transcription factor Tur1.

Dang TTV, Maufrais C, Colin J, Moyrand F, Mouyna I, Coppée JY, Onyishi CU, Lipecka J, Guerrera IC, May RC, Janbon G.

 

PLoS Biol. 2024 Jul 25;22(7):e3002724. doi: 10.1371/journal.pbio.3002724.
eCollection 2024 Jul.PMID: 39052688 

 

A proteomic study of the downregulation of TRIM37 on chondrocytes:
Implications for the MULIBREY syndrome.

Brigant B, Metzinger-Le Meuth V, Boyartchuk V, Ouled-Haddou H, Guerrera IC, Rochette J, Metzinger L.

 

Bone. 2024 Oct;187:117205. doi: 10.1016/j.bone.2024.117205. Epub 2024 Jul 15.
PMID: 39019132 

 

Islet cell stress induced by insulin-degrading enzyme deficiency promotes regeneration and protection from autoimmune diabetes.

Zhu S, Waeckel-Énée E, Oshima M, Moser A, Bessard MA, Gdoura A, Roger K, Mode N, Lipecka J, Yilmaz A, Bertocci B, Diana J, Saintpierre B, Guerrera IC, Scharfmann R, Francesconi S, Mauvais FX, van Endert P.

 

iScience. 2024 May 7;27(6):109929. doi: 10.1016/j.isci.2024.109929.
eCollection 2024 Jun 21.PMID: 38799566 

 

Dual proteomics of infected macrophages reveal bacterial and host players involved in the Francisella intracellular life cycle and cell to cell dissemination by merocytophagy.

Rytter H, Roger K, Chhuon C, Ding X, Coureuil M, Jamet A, Henry T, Guerrera IC, Charbit A.

 

Sci Rep. 2024 Apr 2;14(1):7797. doi: 10.1038/s41598-024-58261-x.PMID: 38565565 

 

Role of KCNK3 Dysfunction in Dasatinib-associated Pulmonary Arterial Hypertension and Endothelial Cell Dysfunction.

Ribeuz HL, Willer AS, Chevalier B, Sancho M, Masson B, Eyries M, Jung V, Guerrera IC, Dutheil M, Jekmek KE, Laubry L, Carpentier G, Perez-Vizcaino F, Tu L, Guignabert C, Chaumais MC, Péchoux C, Humbert M, Hinzpeter A, Mercier O, Capuano V, Montani D, Antigny F.

Am J Respir Cell Mol Biol. 2024 Jul;71(1):95-109. doi: 10.1165/rcmb.2023-0185OC.
PMID: 38546978

 

***Effect of urine alkalization on urinary inflammatory markers in cystinuric patients.

Prot-Bertoye C, Jung V, Tostivint I, Roger K, Benoist JF, Jannot AS, Van Straaten A, Knebelmann B, Guerrera IC, Courbebaisse M.

 

Clin Kidney J. 2024 Feb 22;17(3):sfae040. doi: 10.1093/ckj/sfae040.
eCollection 2024 Mar.PMID: 38510798 

 

***Neat plasma proteomics: getting the best out of the worst.

Metatla I, Roger K, Chhuon C, Ceccacci S, Chapelle M, Pierre-Olivier Schmit, Demichev V, Guerrera IC.

 

Clin Proteomics. 2024 Mar 12;21(1):22. doi: 10.1186/s12014-024-09477-6.
PMID: 38475715 

 

2023

mTOR inhibition suppresses salinomycin-induced ferroptosis in breast cancer stem cells by ironing out mitochondrial dysfunctions.

Cosialls E, Pacreau E, Duruel C, Ceccacci S, Elhage R, Desterke C, Roger K, Guerrera C, Ducloux R, Souquere S, Pierron G, Nemazanyy I, Kelly M, Dalmas E, Chang Y, Goffin V, Mehrpour M, Hamaï A.

 

Cell Death Dis. 2023 Nov 15;14(11):744. doi: 10.1038/s41419-023-06262-5.
PMID: 37968262 

 

Characterization of GEXP15 as a Potential Regulator of Protein Phosphatase 1
in Plasmodium falciparum.

Mansour H, Cabezas-Cruz A, Peucelle V, Farce A, Salomé-Desnoulez S, Metatla I,
Guerrera IC, Hollin T, Khalife J.

 

Int J Mol Sci. 2023 Aug 10;24(16):12647. doi: 10.3390/ijms241612647.PMID: 37628837 

 

Propranolol reduces the accumulation of cytotoxic aggregates in C9orf72-ALS/FTD
in vitro models.

Seidel M, Rajkumar S, Steffke C, Noeth V, Agarwal S, Roger K, Lipecka J, Ludolph A,
Guerrera CI, Boeckers T, Catanese A.

 

Curr Res Neurobiol. 2023 Jul 30;5:100105. doi: 10.1016/j.crneur.2023.100105.
eCollection 2023.PMID: 37576491 

 

***Proteomics of Plasma and Plasma-Treated Podocytes: Application to Focal
and Segmental Glomerulosclerosis.

Chhuon C, Herrera-Marcos LV, Zhang SY, Charrière-Bertrand C, Jung V, Lipecka J, Savas B, Nasser N, Pawlak A, Boulmerka H, Audard V, Sahali D, Guerrera IC, Ollero M.

 

Int J Mol Sci. 2023 Jul 28;24(15):12124. doi: 10.3390/ijms241512124.PMID: 37569500 

 

Pancreatic islet cell stress induced by insulin-degrading enzyme deficiency promotes islet regeneration and protection from autoimmune diabetes.

Zhu S, Waeckel-Énée E, Moser A, Bessard MA, Roger K, Lipecka J, Yilmaz A, Bertocci B, Diana J, Saintpierre B, Guerrera IC, Francesconi S, Mauvais FX, van Endert P.

 

bioRxiv [Preprint]. 2023 Jul 20:2023.07.19.549693. doi: 10.1101/2023.07.19.549693.
Update in: iScience. 2024 May 07;27(6):109929. doi: 10.1016/j.isci.2024.109929.
PMID: 37503145  Preprint
.

 

Insulin-Degrading Enzyme Interacts with Mitochondrial Ribosomes and Respiratory Chain Proteins.

Yilmaz A, Guerrera C, Waeckel-Énée E, Lipecka J, Bertocci B, van Endert P.

 

Biomolecules. 2023 May 26;13(6):890. doi: 10.3390/biom13060890.PMID: 37371470 

 

Secretion of VGF relies on the interplay between LRRK2 and post-Golgi v-SNAREs.

Filippini F, Nola S, Zahraoui A, Roger K, Esmaili M, Sun J, Wojnacki J, Vlieghe A, Bun P, Blanchon S, Rain JC, Taymans JM, Chartier-Harlin MC, Guerrera C, Galli T.

 

Cell Rep. 2023 Mar 28;42(3):112221. doi: 10.1016/j.celrep.2023.112221.
Epub 2023 Mar 10.PMID: 36905628 

 

Proteomic profiling of sweat in patients with cystic fibrosis provides new insights
into epidermal homoeostasis.

Cornet M, Nguyen-Khoa T, Kelly-Aubert M, Jung V, Chedevergne F, Le Bourgeois M, Aoust L, Roger K, Guerrera CI, Sermet-Gaudelus I.

 

Skin Health Dis. 2022 Nov 25;3(1):e161. doi: 10.1002/ski2.161.
eCollection 2023 Feb.PMID: 36751320 

 

2022

***Promitotic Action of Oenothera biennis on Senescent Human Dermal Fibroblasts.

Ceccacci S, Roger K, Metatla I, Chhuon C, Tighanimine K, Fumagalli S, De Lucia A, Pranke I, Cordier C, Monti MC, Guerrera IC.

 

Int J Mol Sci. 2022 Dec 2;23(23):15153. doi: 10.3390/ijms232315153.PMID: 36499490 

 

The Heterochromatin protein 1 is a regulator in RNA splicing precision deficient
in ulcerative colitis.

Mata-Garrido J, Xiang Y, Chang-Marchand Y, Reisacher C, Ageron E, Guerrera IC, Casafont I, Bruneau A, Cherbuy C, Treton X, Dumay A, Ogier-Denis E, Batsché E, Costallat M,
Revêchon G, Eriksson M, Muchardt C, Arbibe L.

 

Nat Commun. 2022 Nov 18;13(1):6834. doi: 10.1038/s41467-022-34556-3.
PMID: 36400769 

 

Pharmacological chaperone-rescued cystic fibrosis CFTR-F508del mutant overcomes PRAF2-gated access to endoplasmic reticulum exit sites.

Saha K, Chevalier B, Doly S, Baatallah N, Guilbert T, Pranke I, Scott MGH, Enslen H,
Guerrera C, Chuon C, Edelman A, Sermet-Gaudelus I, Hinzpeter A, Marullo S.

 

Cell Mol Life Sci. 2022 Sep 27;79(10):530. doi: 10.1007/s00018-022-04554-1.
PMID: 36167862 

 

Human anti-smallpox long-lived memory B cells are defined by dynamic interactions
in the splenic niche and long-lasting germinal center imprinting.

Chappert P, Huetz F, Espinasse MA, Chatonnet F, Pannetier L, Da Silva L, Goetz C, Mégret J, Sokal A, Crickx E, Nemazanyy I, Jung V, Guerrera C, Storck S, Mahévas M, Cosma A, Revy P, Fest T, Reynaud CA, Weill JC.

 

Immunity. 2022 Oct 11;55(10):1872-1890.e9. doi: 10.1016/j.immuni.2022.08.019.
Epub 2022 Sep 20.PMID: 36130603 

 

Differential CFTR-Interactome Proximity Labeling Procedures Identify Enrichment
in Multiple SLC Transporters.

Chevalier B, Baatallah N, Najm M, Castanier S, Jung V, Pranke I, Golec A, Stoven V, Marullo S, Antigny F, Guerrera IC, Sermet-Gaudelus I, Edelman A, Hinzpeter A.

 

Int J Mol Sci. 2022 Aug 11;23(16):8937. doi: 10.3390/ijms23168937.PMID: 36012204 

 

Plasmodium berghei leucine-rich repeat protein 1 downregulates protein phosphatase 1 activity and is required for efficient oocyst development.

Fréville A, Gnangnon B, Tremp AZ, De Witte C, Cailliau K, Martoriati A, Aliouat EM,
Fernandes P, Chhuon C, Silvie O, Marion S, Guerrera IC, Dessens JT, Pierrot C, Khalife J.

 

Open Biol. 2022 Aug;12(8):220015. doi: 10.1098/rsob.220015.
Epub 2022 Aug 3.PMID: 35920043 

 

RNF213-associated urticarial lesions with hypercytokinemia.

Louvrier C, Awad F, Cosnes A, El Khouri E, Assrawi E, Daskalopoulou A, Copin B, Bocquet H, Chantot Bastaraud S, Arenas Garcia A, Dastot Le Moal F, De La Grange P, Duquesnoy P, Guerrera CI, Piterboth W, Ortonne N, Chosidow O, Karabina SA, Amselem S, Giurgea I.

 

J Allergy Clin Immunol. 2022 Dec;150(6):1545-1555. doi: 10.1016/j.jaci.2022.06.016. Epub 2022 Jun 30.PMID: 35780935 

 

UNC45A deficiency causes microvillus inclusion disease-like phenotype by impairing myosin VB-dependent apical trafficking.

Duclaux-Loras R, Lebreton C, Berthelet J, Charbit-Henrion F, Nicolle O, Revenu des Courtils C, Waich S, Valovka T, Khiat A, Rabant M, Racine C, Guerrera IC, Baptista J, Mahe MM,
Hess MW, Durel B, Lefort N, Banal C, Parisot M, Talbotec C, Lacaille F, Ecochard-Dugelay E, Demir AM, Vogel GF, Faivre L, Rodrigues A, Fowler D, Janecke AR, Müller T, Huber LA, Rodrigues-Lima F, Ruemmele FM, Uhlig HH, Del Bene F, Michaux G, Cerf-Bensussan N, Parlato M.

 

J Clin Invest. 2022 May 16;132(10):e154997. doi: 10.1172/JCI154997.PMID: 35575086 

 

Extracellular Vesicles From LPS-Treated Macrophages Aggravate Smooth Muscle Cell Calcification by Propagating Inflammation and Oxidative Stress.

Yaker L, Tebani A, Lesueur C, Dias C, Jung V, Bekri S, Guerrera IC, Kamel S, Ausseil J, Boullier A.

 

Front Cell Dev Biol. 2022 Mar 9;10:823450. doi: 10.3389/fcell.2022.823450.
eCollection 2022.PMID: 35356285 

 

Mapping PP1c and Its Inhibitor 2 Interactomes Reveals Conserved and Specific Networks in Asexual and Sexual Stages of Plasmodium.

De Witte C, Aliouat EM, Chhuon C, Guerrera IC, Pierrot C, Khalife J.

 

Int J Mol Sci. 2022 Jan 19;23(3):1069. doi: 10.3390/ijms23031069.PMID: 35162991 

 

***BLI-MS: Combining biolayer interferometry and mass spectrometry.

Jung V, Roger K, Chhuon C, Pannetier L, Lipecka J, Gomez JS, Chappert P, Charbit A, Guerrera IC.

 

Proteomics. 2022 May;22(9):e2100031. doi: 10.1002/pmic.202100031.
Epub 2022 Jan 5.PMID: 34958708

 

2021

RESVEGA, a Nutraceutical Omega-3/Resveratrol Supplementation, Reduces Angiogenesis in a Preclinical Mouse Model of Choroidal Neovascularization.

Courtaut F, Aires V, Acar N, Bretillon L, Guerrera IC, Chhuon C, Pais de Barros JP, Olmiere C, Delmas D.

 

Int J Mol Sci. 2021 Oct 13;22(20):11023. doi: 10.3390/ijms222011023.PMID: 34681683 

 

STING protects breast cancer cells from intrinsic and genotoxic-induced DNA instability via a non-canonical, cell-autonomous pathway.

Cheradame L, Guerrera IC, Gaston J, Schmitt A, Jung V, Goudin N, Pouillard M,
Radosevic-Robin N, Modesti M, Judde JG, Cairo S, Goffin V.

 

Oncogene. 2021 Dec;40(49):6627-6640. doi: 10.1038/s41388-021-02037-4.
Epub 2021 Oct 8.PMID: 34625708

 

Polo-like kinase 1 (Plk1) regulates DNA replication origin firing and interacts
with Rif1 in Xenopus.

Ciardo D, Haccard O, Narassimprakash H, Cornu D, Guerrera IC, Goldar A, Marheineke K.

 

Nucleic Acids Res. 2021 Sep 27;49(17):9851-9869. doi: 10.1093/nar/gkab756.
PMID: 34469577 

 

The pentose phosphate pathway constitutes a major metabolic hub in pathogenic Francisella.

Rytter H, Jamet A, Ziveri J, Ramond E, Coureuil M, Lagouge-Roussey P, Euphrasie D, Tros F, Goudin N, Chhuon C, Nemazanyy I, de Moraes FE, Labate C, Guerrera IC, Charbit A.

 

PLoS Pathog. 2021 Aug 2;17(8):e1009326. doi: 10.1371/journal.ppat.1009326.
eCollection 2021 Aug.PMID: 34339477 

 

Synaptic disruption and CREB-regulated transcription are restored by K+ channel blockers in ALS.

Catanese A, Rajkumar S, Sommer D, Freisem D, Wirth A, Aly A, Massa-López D, Olivieri A, Torelli F, Ioannidis V, Lipecka J, Guerrera IC, Zytnicki D, Ludolph A, Kabashi E, Mulaw MA, Roselli F, Böckers TM.

 

EMBO Mol Med. 2021 Jul 7;13(7):e13131. doi: 10.15252/emmm.202013131.
Epub 2021 Jun 14.PMID: 34125498 

 

***Identification and Relative Quantification of hFSH Glycoforms in Women's Sera via MS-PRM-Based Approach.

Melchiorre C, Chhuon C, Jung V, Lipecka J, Di Rella F, Conforti A, Amoresano A,
Carpentieri A, Guerrera IC.

 

Pharmaceutics. 2021 May 27;13(6):798. doi: 10.3390/pharmaceutics13060798.
PMID: 34071747 

 

Glucose treatment of human pancreatic β-cells enhances translation of mRNAs involved in energetics and insulin secretion.

Zakaria A, Berthault C, Cosson B, Jung V, Guerrera IC, Rachdi L, Scharfmann R.

 

J Biol Chem. 2021 Jul;297(1):100839. doi: 10.1016/j.jbc.2021.100839.
Epub 2021 May 27.PMID: 34051232 

 

Integrative Cell Type-Specific Multi-Omics Approaches Reveal Impaired Programs
of Glial Cell Differentiation in Mouse Culture Models of DM1.

González-Barriga A, Lallemant L, Dincã DM, Braz SO, Polvèche H, Magneron P, Pionneau C, Huguet-Lachon A, Claude JB, Chhuon C, Guerrera IC, Bourgeois CF, Auboeuf D, Gourdon G, Gomes-Pereira M.

 

Front Cell Neurosci. 2021 May 5;15:662035. doi: 10.3389/fncel.2021.662035.
eCollection 2021.PMID: 34025359 

 

Role of VAMP7-dependent secretion of reticulon 3 in neurite growth.

Wojnacki J, Nola S, Bun P, Cholley B, Filippini F, Pressé MT, Lipecka J, Lam SM, N'guyen J, Simon A, Ouslimani A, Shui G, Fader CM, Colombo MI, Guerrera IC, Galli T.

 

Cell Rep. 2021 Apr 13;35(2):109006. doi: 10.1016/j.celrep.2021.109006.
PMID: 33852853  No abstract available.

 

Sickle Cell Trait Modulates the Proteome and Phosphoproteome of Plasmodium falciparum-Infected Erythrocytes.

Chauvet M, Chhuon C, Lipecka J, Dechavanne S, Dechavanne C, Lohezic M, Ortalli M,
Pineau D, Ribeil JA, Manceau S, Le Van Kim C, Luty AJF, Migot-Nabias F, Azouzi S,
Guerrera IC, Merckx A.

 

Front Cell Infect Microbiol. 2021 Mar 24;11:637604. doi: 10.3389/fcimb.2021.637604. eCollection 2021.PMID: 33842387 

 

The equilibrative nucleoside transporter ENT1 is critical for nucleotide homeostasis and optimal erythropoiesis.

Mikdar M, González-Menéndez P, Cai X, Zhang Y, Serra M, Dembele AK, Boschat AC,
Sanquer S, Chhuon C, Guerrera IC, Sitbon M, Hermine O, Colin Y, Le Van Kim C, Kinet S, Mohandas N, Xia Y, Peyrard T, Taylor N, Azouzi S.

 

Blood. 2021 Jun 24;137(25):3548-3562. doi: 10.1182/blood.2020007281.
PMID: 33690842 

 

Disruption of pathways regulated by Integrator complex in Galloway-Mowat syndrome due to WDR73 mutations.

Tilley FC, Arrondel C, Chhuon C, Boisson M, Cagnard N, Parisot M, Menara G, Lefort N, Guerrera IC, Bole-Feysot C, Benmerah A, Antignac C, Mollet G.

 

Sci Rep. 2021 Mar 8;11(1):5388. doi: 10.1038/s41598-021-84472-7.PMID: 33686175 

 

Aggressiveness and Metastatic Potential of Breast Cancer Cells Co-Cultured
with Preadipocytes and Exposed to an Environmental Pollutant Dioxin: An in Vitro
and in Vivo Zebrafish Study.

Koual M, Tomkiewicz C, Guerrera IC, Sherr D, Barouki R, Coumoul X.

 

Environ Health Perspect. 2021 Mar;129(3):37002. doi: 10.1289/EHP7102.
Epub 2021 Mar 8.PMID: 33683140 

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